mcns2024

Lecture Notes and Recordings 2024

Page history last edited by Alan Lai 9 months, 3 weeks ago

Schedule Schedule Schedule

	Lectures	Lecturer	Reading	Lecture Notes	Video
Thu, July 25	Day 1 - Bootcamp
	Introduction to Neuronal biophysics 1	Baccus, S.		Biophysics MCN 2024.pdf	https://mbl.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=11b29511-d8e1-4e7b-829d-b1b8011f85a2&start=1.16109
	Introduction to Neuronal biophysics 2	Baccus, S.			See above
	Linear Algebra	Goldman, M.	Basic, in the context of connectionist neural networks: LinearAlgebra_Jordan_86_compressed.pdf SVDPCA.pdf (math of PCA/SVD) More advanced linear algebra (beyond lecture): Goldman_FeedforwardMemory09_wSupplmt.pdf (non-normal matrices) Mackeviciusetal_seqNMF19.pdf (extends SVD/NMF to sequences, w/tensors)	LinearAlgebra_MCN2024.pptx PCA_MCNTutorial.pdf DiffEqns_MCNTutorial.pdf	https://mbl.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d4cf8759-0803-417b-9876-b1b8016a8a1d

	Lectures	Lecturer	Reading	Lecture Notes	Video
July 26 (Friday)	Day 2 -
	Introduction to Probability Theory, Statistics, and Information Measures	U Eden		Probability and Stats Intro 2024.pptx	https://mbl.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=0b7dba13-f53e-4a4a-85f2-b1b701555c1a&start=0.273678
	Neural Decoding and State-Space Model	U Eden		Code for talk figures: Stats Intro Lecture Code and Data.zip	https://mbl.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=92a0c6d2-3552-40e3-b128-b1b70155839c&start=0.306349
	Backyard brains	G Gage			https://mbl.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=921dc94f-bfe1-460f-afed-b1b70155b7ea&start=0.015066

	Lectures	Lecturer	Reading	Lecture Notes	Video
Day 3. July 29 (Monday)	Day 3
	single synapse and neuron physiology	N Spruston	Sun_biorxiv_new_2023.pdf	MBL_MCN_7-2024_part_1_4notes.pdf	https://mbl.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=1f958814-1c67-47d1-8f4a-b1bc00ce9d9a&start=1.073803
	single neuron modeling and dynamical systems theory	B Ermentrout			https://mbl.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d25700eb-4c16-4120-b8fd-b1b70155e14e&start=1.417974
	XPP tutorial	B Ermentrout			https://mbl.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=702423ac-0356-4028-b76b-b1b70156075b

	Lectures	Lecturer	Reading	Lecture Notes	Video	Tutorials/Additional material
Day 4. July 30 (Tuesday)
	Introduction to neural coding	A Fairhall		MCN2024.pptx	List of Internal Recordings
	Computation in the Early Visual System	S Baccus		Baccus MCN 2024.pdf	https://mbl.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=4d8facca-0ee3-424e-9456-b1bc00cf1ccb&start=687.799154
	Neural Coding	J Fitzgerald	2016-Naumann-Cell.pdf 2020-Biswas-CurrOpinNeurobiol.pdf 2020-Yildizoglu-CurrBiol.pdf 2022-Biswas-PhysRevResearch.pdf 2022-Yang-Cell.pdf 2023-Biswas-arXiv.pdf	2024-07-30-WholeBrainCoding-clean.pdf	https://mbl.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f07f738d-f4a3-4f11-943b-b1bd016c2e1a&start=2.702289
	Massey Family Endowed Lecture	A Fairhall

	Lectures	Lecturer	Reading	Lecture Notes	Video	Tutorials/Additional material
Day 5, July 31 (Wednesday)
	Recurrent Network Theory of E-I Balance	H Sompolinsky		Internal Lecture Notes and Recordings	List of Internal Recordings
	The structure function mapping in low-rank recurrent neural networks	S Ostojic	mastrogiuseppe2018.pdf beiran2021.pdf dubreuil_valente2022.pdf	structure_function_presented.pdf	Not Recorded

	Lectures	Lecturer	Reading	Lecture Notes	Video	Tutorials/Additional material
Day 6, August 1 (Thursday)
	Synaptic Plasticity homeostatic regulation	C Clopath		WoodsHole_LectureNotes_Clopath.pdf WoodsHole24_Clopath.pdf	Not Recorded
	Cellular and Circuit Basis of Memory	A Fenton		Fenton-MCN2024.pdf	Not Recorded
	Pattern Generation and Robustness in Neural Circuits	E Marder		Internal Lecture Notes and Recordings	List of Internal Recordings

	Lectures	Lecturer	Reading	Lecture Notes	Video	Tutorials/Additional material
Day 7, August 2 (Friday)
	Neural Correlations and Behavior	X Pitkow		CorrelationsAndBehavior_MBL.key	https://mbl.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=313cccd4-3bfe-454b-aa29-b1c000f573e8&start=1.327927
	Geometry of Neural Representation and Abstraction	S Fusi		AbstractionWoodsHole_2024_finalfinal3_reduced.pptx	https://mbl.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=7459cb72-0432-4d0d-9d16-b1c0011f055a

Lectures

Lecturer

Reading

Lecture Notes

Video

	Lectures	Lecturer	Reading	Lecture Notes	Video	Tutorials/Additional material
Day 8, August 5 (Monday)
	State-Dependent Neural Computations.	A Churchland	ChurchlandStates.pdf RabinowitzSharedGain_churchlandLecture.pdf ChristensenRunning_churchlandLecture.pdf	StateDependentComputationsSmall.pdf	https://mbl.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=00d98d51-d0f0-4dcf-8494-b1bc00de00fb
	High Dimensional Networks and Deep Learning	S Ganguli	Review1.Sparsity.Dimensionality.pdf Review2.SimplicityComplexity.pdf Review3.StatMech.pdf Williams.Tensor.Analysis.pdf Rumyantsev.Fundamental.Limits.pdf Rumyantsev.Fundamental.Limits.Math.pdf	24.Ganguli.Part1.HighDimStats.pptx

	Lectures	Lecturer	Reading	Lecture Notes	Video	Tutorials/Additional material
Day 9, August 6 (Tuesday)
	Neuronal Population Interactions between brain areas	B Yu		20240806_woods_hole.pdf	https://mbl.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2c67a2ff-a425-4e91-9fe4-b1c401167e73&start=2.801651
	High Dimensional Networks and Deep Learning	S Ganguli	Review4.DeepLearningTheory.pdf Maheswaranathan.ExplainableAI.Retina.pdf Ocko.Lindsey.Retinal.CellTypes.pdf Saxe.SemanticDevelopment.pdf Saxe.SemanticDevelopment.Supp.pdf	24.Ganguli.Part2.DeepLearning.pptx	https://mbl.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=0849cba0-8887-424a-8b83-b1c40116aa08
	Dimensionality Reduction Tutorial	B Yu		dim_reduction_part1.pdf dim_reduction_part2.pdf	https://mbl.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=1a859c3f-b10b-430f-b1a7-b1c4015eefb3

	Lectures	Lecturer	Reading	Lecture Notes	Video
Day 10, August 7 (Wednesday)
	Representational Geometry	S Chung	chung-abbott-neural-population-geometry.pdf chung-lee-sompolinsky-prx2018.pdf cohen-chung-2020-ncomms.pdf yerxa-kuang-simoncelli-chung-2023.pdf	Talk_MCN_20240807_v3_upload.pdf	https://mbl.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=b13d99c6-4974-4c47-851e-b1c501157bd1
	Dynamical Systems Models of Neural Activity and Behavior	S Linderman		2024-08-07 Woods Hole.pdf	https://mbl.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=c40ee3b1-ca4d-4185-b5a7-b1c5011556b7&start=0.222278
	Tutorial	S Linderman			https://mbl.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=b9a761af-93bd-4c1f-bfd2-b1c600130166&start=0.100341

	Lectures	Lecturer	Reading	Lecture Notes	Video	Tutorials/Additional material
Day 11, August 8 (Thursday)
	Decision-Making	R Kiani		Kiani-MCN2024.pdf	https://mbl.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=374bd9a4-4e7e-4a31-b4cc-b1c60119b26e&start=2.853411
	Neural Integrators: Linear Network Theory and Beyond	M Goldman	Original line attractor paper: Seung_LineAttractor96.pdf Nonlinear integrator model + sloppy models: Fisheretal_MemoryNetworkFitting13_Main&Supplmt_reduced.pdf Balanced network model (derivative feedback mechanism): LimGoldman_NatNeuro_Main&Supplemt.pdf	MCNTalk_LinearNetTheory&Integration24.pptx	https://mbl.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=800d72fd-713c-4df9-b334-b1c60119ca56&start=0.470096
	PyTorch Tutorial	TAs	Yang2020_Neuron.pdf	https://drive.google.com/file/d/1CuGswkrM62BjihbA_9pDcrdPqtkpXUzE/view?usp=sharing	https://mbl.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=65c99e7f-7887-47f8-82ea-b1c7002ce3bc&start=1.343364

	Lectures	Lecturer	Reading	Lecture Notes	Video	Tutorials/Additional material
Day 12, August 9 (Friday)
	Vector Computation for Navigation	L Abbott		AbbottLecture.key	https://mbl.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=1b46c1cb-b28b-4052-9ba8-b1c70117c77e&start=0.468328
	Local and non-local representations for navigation	L Frank	Skaggs_Barnes_Phase_Precession_Hippo_1996.pdf Joshi_Frank_Dynamic_Sychronization_Hippocampus_Stepping_Nature_2023.pdf Shin_Jadhav_2016_Multiple modes of hippocampal-prefrontal interactions in memory-guided behavior.pdf	Internal Lecture Notes and Recordings	List of Internal Recordings
	Modeling the memory system	I Fiete		2024_Fiete_Aug_WoodsHole.pdf	https://mbl.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bd3b6ef4-6844-4671-a623-b1c70150d3fd&start=1.490961

	Lectures	Lecturer	Reading	Lecture Notes	Video	Tutorials/Additional material
Day 13, August 12 (Monday)
	RL and circuit mechanisms	K Stachenfeld		[MBL] RL tutorial.pptx	https://mbl.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fa4397ad-1203-464a-a81e-b1ca01156da7&start=1.906047
	Reinforcement Learning and Dopamine	N Uchida	Amo et al 2022.pdf Kim et al 2020.pdf Starkweather et al 2017.pdf Qian et al 2024.pdf Sutton Barto Chapter 9.pdf	Uchida2024.pptx	https://mbl.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=af500319-6827-4f14-9f4a-b1ca01151d7a	TD learning demo codes: TDlearning_maze.m TDlearning_CSC.m

	Lectures	Lecturer	Reading	Lecture Notes	Video	Tutorials/Additional material
Day 14, August 13 (Tuesday)
	Neural Computations in the Cerebellum	R Shadmehr	Shadmehr_Woods Hole 2024.pptx	https://mbl.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ff342316-89ed-4ac1-96b3-b1cb011806f4&start=0.557761
	Basal Ganglia and Learned Motor Behavior	M Fee	Fee Lecture MCN 2024.pptx	https://mbl.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5a65c213-c0da-4721-ada9-b1cb0118ce24&start=0.591876
	Motor Planning and Control	S Solla	MCN 2024 SOLLA.pdf	https://mbl.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=82a1af81-f171-4d19-adcc-b1cb014a9d9a

	Lectures	Lecturer	Reading	Lecture Notes	Video	Tutorials/Additional material
Day 15, August 14 (Wednesday)
	The neurocognitive mechanisms of model-based reinforcement learning	M Mattar		2024-08-14 - MCN lecture.pdf	https://mbl.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=8d8f9d2d-b220-4faa-9bf3-b1cc011733e4&start=0.917178
	The function of direct and indirect pathways of basal ganglia	I Witten		Internal Lecture Notes and Recordings	List of Internal Recordings

	Lectures	Lecturer	Reading	Lecture Notes	Video	Tutorials/Additional material
Day 16, August 15 (Thursday)
	Discovering natural behavioral fingerprints	B Datta		DattaMCN2024.key	https://mbl.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fd92614e-f348-4cf9-b911-b1cd0112fbf1&start=0.151719
	Distributed brain dynamics and cognition in a multi-regional cortex, lecture 1	X Wang		mcn2024a_xjwang.pptx	https://mbl.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6b99d42f-0963-4963-b89e-b1cd0112aa99&start=1.684338
	Distributed brain dynamics and cognition in a multi-regional cortex, lecture 2	X Wang		mcn2024b_xjwang.pptx	https://mbl.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ede1f1f7-7b96-489e-9afe-b1cd01529db7

	Lectures	Lecturer	Reading	Lecture Notes	Video	Tutorials/Additional material
Day 17, August 16 (Friday)
	Synaptic Credit Assignment	K Svobda			List of Internal Recordings
	Modeling of Human Cortex	J Murray		Murray_Lecture_1.pdf	https://mbl.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=dd5cdd61-b699-43ff-bced-b1ce01134439&start=0.211523
	Neural Circuit Models of Mental Disorders	J Murray		Murray_Lecture_2.pdf	https://mbl.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=17acb484-09e7-40cd-b5be-b1ce014c4408

Comments (0)

You don't have permission to comment on this page.

To join this workspace, request access.

Already have an account? Log in!

Loading…

Information

Travel Information

IT Related Information

Course materials

General Readings

Lecture Notes and Recordings 2024

List of Internal Recordings

Project Suggestions

List of Tutorials

Misc

Loading…